2023-Fall Next Gene. Sequencing& Bioinformatics (LIFE622C-01) The course syllabus

1.Course Information

Course No. LIFE622C Section 01 Credit 3.00
Category Major elective Course Type Classroom Course prerequisites
Postechian Core Competence
Hours MON, WED / 09:30 ~ 10:45 / Jigok Research Bldg[310] Grading Scale G

2. Instructor Information

Kim Jong Kyoung Name Kim Jong Kyoung Department Dept. of Life Sciences
Email address blkimjk@postech.ac.kr Homepage https://cb.postech.ac.kr/
Office HTTPS://CB.POSTECH.AC.KR/ Office Phone 0542792353
Office Hours 월 17:00-18:00

3. Course Objectives

본 강의에서는 생명과학 전공에 필수적인 차세대 염기서열 데이터의 생물정보학적 분석 방법론에 대하여 학습한다.

4. Prerequisites & require

없음.

5. Grading

중간고사 (30%), 기말고사 (30%), 과제물 및 프로젝트 (40%)

6. Course Materials

Title Author Publisher Publication
Year/Edition		 ISBN

7. Course References

- Bioinformatics Data Skills, Vince Buffalo
- The Biostar Handbook: Bioinformatics Data Analysis Guide (https://www.biostarhandbook.com/)
- R for Data Science (http://r4ds.had.co.nz/)

8. Course Plan

1주: Essential skills for bioinformatics: Unix/Linux
2주: Essential skills for bioinformatics: Unix/Linux
3주: Essential skills for bioinformatics: Unix/Linux
4주: Essential skills for bioinformatics: Unix/Linux
5주: Next-generation sequencing technologies
6주: FASTA/FASTQ, Installing UNIX programs, Accessing SRA
7주: Sequence alignments, Aligners
8주: 중간고사
9주: RNA-seq: Introduction
10주: RNA-seq: QC
11주: RNA-seq: Alignment
12주: RNA-seq: Quantification
13주: RNA-seq: Differential analysis
14주: RNA-seq: Advanced analysis
15주: RNA-seq: Advanced analysis
16주: 기말고사

9. Course Operation

이론강의, 실습, 발표

10. How to Teach & Remark

11. Supports for Students with a Disability

- Taking Course: interpreting services (for hearing impairment), Mobility and preferential seating assistances (for developmental disability), Note taking(for all kinds of disabilities) and etc.

- Taking Exam: Extended exam period (for all kinds of disabilities, if needed), Magnified exam papers (for sight disability), and etc.

- Please contact Center for Students with Disabilities (279-2434) for additional assistance

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